Release NotesΒΆ
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Release 6.0.0
Updates
- We have removed the coupling of Biological Classification and AMP tier when adding variant interpretations
- The functionality to download a PDF export has been removed from the export preview page
- The cDSS can now support multiple analyses under a single referral, therefore a unique case id is used in the URL for each referral. For backwards compatibility, the case summary page will redirect from any old referral id to the new case id.
- Bug fixes including CNV and SV sizes shown in BP instead of KB
Info
Variant filtering for reported variants in tumour first cases in the cDSS may differ from that in HTMLs: in these cases, we apply both somatic and germline prioritisation algorithms to all variants with GEL internal population germline allele frequency under 2%, so all such variants will appear on the cDSS. In the HTMLs and CSV tables, all variants with either GEL internal or gnomAD population germline allele frequency over 1% and no potential effect on cancer predisposition genes (nothing in the "Interpretation as germline" field) are filtered out. We are currently working on fully harmonising the variant lists between cDSS and HTML, and this discrepancy should disappear soon.
Release 5.1.2
Updates
- Bug fixes including fixing the redirection from the IP to Case Summary Page when opening a case
Release 5.1.0
Updates
- Structural and copy number variants can now be filtered by size
- Structural variants can now be filtered by supporting reads e.g., a minimum number of paired or split reads
- Structural and copy number variant plots can now be moved up and down
- Link outs to resources such as MSK Impact, Genie and Mitelman Database have been added to the variant details pages for somatic small, somatic structural and somatic copy number variants
- Structural and copy number variant plot error message are now specific to the relevant visualisation
- Bug fixes including the classification options available to TINC cases
Release 5.0.0
Updates
- Case statuses are now integrated with the IP, please see Case Management for further details
- Cancer Hotspots are available in the somatic small variant details page
- The patient header has been condensed to maximise page space
- Improvements to the germline BAF plot makes regions with no coverage easier to distinguish from LOH regions (e.g. resulting from UPD)
- 8 Bug Fixes including a fix to the SV plot - arcs will now readjust on the y-axis when zooming in
Release 4.5.0
Updates
- Germline CNVs are visible in the case summary table
- 7 Bug Fixes
Release 4.4.0
Updates
- Updated to use the new National Genomic Test Directory
- Fixed link to the User Guide
- Ability to mark variant as an artefact during Variant Interpretation
- Moved variant list tabs to the main menu
- 6 Bug Fixes including the population frequency round off in the variant list
Release 4.3.0
Updates
- New case warning for unaccredited sample types
- Colour updates for the Coverage Depth, B-allele frequency and Copy Number plots
- Gene plots are now available in full screen mode
- 14 Bug Fixes